A guide to MendelVar: exploration of method, input options, results, and more!

Method

Rationale and Intro

MendelVar components

MendelVar data sources

Input

First steps with MendelVar. General input options

Route 1: user pre-defined genomic intervals

Route 2: list of single SNPs with custom fixed flanks

Route 3: list of single SNPs with LDlink fine-mapping

Enrichment testing with INRICH

Results

Overview of MendelVar outputs

Disease and gene overlap table

Variant overlap table

Gene set enrichment: tabular

Gene set enrichment: figure